3D structure

PDB id
5ZEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
M. smegmatis P/P state 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
5ZEU|1|a|A|512, 5ZEU|1|a|U|514, 5ZEU|1|a|A|515
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5ZEU_024 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2709
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5ZEU|1|a|G|495
5ZEU|1|a|U|496
5ZEU|1|a|G|497
5ZEU|1|a|C|498
5ZEU|1|a|C|499
5ZEU|1|a|A|500
5ZEU|1|a|G|501
*
5ZEU|1|a|C|508
5ZEU|1|a|G|509
5ZEU|1|a|G|510
5ZEU|1|a|U|511
5ZEU|1|a|A|512
5ZEU|1|a|A|513
5ZEU|1|a|U|514
5ZEU|1|a|A|515
5ZEU|1|a|C|516

Current chains

Chain a
16S rRNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:


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