IL_5ZLU_023

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_023 not in the Motif Atlas

Geometric match to IL_6CZR_130

Geometric discrepancy: 0.2062

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5ZLU|1|G|G|446
5ZLU|1|G|G|447
5ZLU|1|G|A|448
5ZLU|1|G|C|449
5ZLU|1|G|G|450
*
5ZLU|1|G|C|483
5ZLU|1|G|G|484
5ZLU|1|G|G|485
5ZLU|1|G|U|486
5ZLU|1|G|A|487
5ZLU|1|G|C|488

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain U

30S ribosomal protein S16