IL_5ZLU_028

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_028 not in the Motif Atlas

Homologous match to IL_4LFB_023

Geometric discrepancy: 0.1977

The information below is about IL_4LFB_023

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5ZLU|1|G|U|580
5ZLU|1|G|G|581
5ZLU|1|G|U|582
5ZLU|1|G|A|583
5ZLU|1|G|G|584
*
5ZLU|1|G|U|757
5ZLU|1|G|G|758
5ZLU|1|G|A|759
5ZLU|1|G|G|760
5ZLU|1|G|G|761

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain A

30S ribosomal protein S17

Chain Q

30S ribosomal protein S12

Chain T

30S ribosomal protein S15