IL_5ZLU_082

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_082 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.4424

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5ZLU|1|V|C|844
5ZLU|1|V|G|845
5ZLU|1|V|C|846
5ZLU|1|V|U|847
5ZLU|1|V|G|848
5ZLU|1|V|A|849
5ZLU|1|V|C|850
*
5ZLU|1|V|G|928
5ZLU|1|V|G|929
5ZLU|1|V|U|930
5ZLU|1|V|G|931
5ZLU|1|V|G|932
5ZLU|1|V|A|933
5ZLU|1|V|G|934

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L30