IL_5ZLU_099

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5ZLU|1|V|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_099 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.2185

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5ZLU|1|V|C|1208
5ZLU|1|V|G|1209
5ZLU|1|V|A|1210
5ZLU|1|V|U|1211
5ZLU|1|V|G|1212
5ZLU|1|V|A|1213
5ZLU|1|V|A|1214
5ZLU|1|V|G|1215
*
5ZLU|1|V|U|1234
5ZLU|1|V|G|1235
5ZLU|1|V|G|1236
5ZLU|1|V|A|1237
5ZLU|1|V|G|1238

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L20