IL_5ZLU_120

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_120 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.4854

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5ZLU|1|V|G|1856
5ZLU|1|V|G|1857
5ZLU|1|V|G|1858
5ZLU|1|V|A|1859
5ZLU|1|V|G|1860
*
5ZLU|1|V|C|1882
5ZLU|1|V|G|1883
5ZLU|1|V|A|1884
5ZLU|1|V|A|1885
5ZLU|1|V|C|1886

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain Y

50S ribosomal protein L1

Chain w

50S ribosomal protein L31