IL_5ZLU_194

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUGGA*UACCCCG

Length

13 nucleotides

Bulged bases

5ZLU|1|V|U|2068, 5ZLU|1|V|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5ZLU_194 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3366

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

5ZLU|1|V|C|2066
5ZLU|1|V|G|2067
5ZLU|1|V|U|2068
5ZLU|1|V|G|2069
5ZLU|1|V|G|2070
5ZLU|1|V|A|2071
*
5ZLU|1|V|U|2438
5ZLU|1|V|A|2439
5ZLU|1|V|C|2440
5ZLU|1|V|C|2441
5ZLU|1|V|C|2442
5ZLU|1|V|C|2443
5ZLU|1|V|G|2444

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain EE

Macrolide efflux protein

Chain Z

50S ribosomal protein L2

Chain b

50S ribosomal protein L4