IL_6AHD_004
3D structure
- PDB id
- 6AHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AHD_004 not in the Motif Atlas
- Geometric match to IL_413D_001
- Geometric discrepancy: 0.3245
- The information below is about IL_413D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6AHD|1|F|U|31
6AHD|1|F|U|32
6AHD|1|F|G|33
6AHD|1|F|G|34
*
6AHD|1|G|C|13
6AHD|1|G|A|14
6AHD|1|G|U|15
6AHD|1|G|G|16
Current chains
- Chain F
- U6snRNA
- Chain G
- pre-mRNA
Nearby chains
- Chain 8
- Zinc finger matrin-type protein 2
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain Z
- Pre-mRNA-splicing factor 38A
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