IL_6AWC_012

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6AWC|1|A|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3535

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6AWC|1|A|G|147
6AWC|1|A|G|148
6AWC|1|A|A|149
6AWC|1|A|U|150
6AWC|1|A|A|151
6AWC|1|A|A|152
6AWC|1|A|C|153
*
6AWC|1|A|G|168
6AWC|1|A|C|169
6AWC|1|A|U|170
6AWC|1|A|A|171
6AWC|1|A|A|172
6AWC|1|A|U|173
6AWC|1|A|A|174
6AWC|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

30S ribosomal protein S20