IL_6AWC_014

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6AWC|1|A|U|244, 6AWC|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.3462

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6AWC|1|A|G|242
6AWC|1|A|A|243
6AWC|1|A|U|244
6AWC|1|A|U|245
6AWC|1|A|A|246
6AWC|1|A|G|247
*
6AWC|1|A|C|277
6AWC|1|A|G|278
6AWC|1|A|A|279
6AWC|1|A|C|280
6AWC|1|A|G|281
6AWC|1|A|A|282
6AWC|1|A|U|283
6AWC|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain T

30S ribosomal protein S17