IL_6AWC_032

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_032 not in the Motif Atlas

Geometric match to IL_1G1X_001

Geometric discrepancy: 0.2579

The information below is about IL_1G1X_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6AWC|1|A|G|654
6AWC|1|A|A|655
*
6AWC|1|A|U|751
6AWC|1|A|G|752
6AWC|1|A|A|753
6AWC|1|A|C|754

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S8

Chain R

30S ribosomal protein S15