IL_6AWC_037

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_037 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.2314

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6AWC|1|A|C|779
6AWC|1|A|A|780
6AWC|1|A|A|781
6AWC|1|A|A|782
6AWC|1|A|C|783
*
6AWC|1|A|G|799
6AWC|1|A|G|800
6AWC|1|A|U|801
6AWC|1|A|A|802
6AWC|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S11

Chain X

30S ribosomal protein S21