IL_6AWC_059

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWC_059 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.2661

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6AWC|1|A|G|887
6AWC|1|A|G|888
6AWC|1|A|A|889
6AWC|1|A|G|890
6AWC|1|A|U|891
6AWC|1|A|A|892
6AWC|1|A|C|893
6AWC|1|A|G|894
*
6AWC|1|A|U|905
6AWC|1|A|A|906
6AWC|1|A|A|907
6AWC|1|A|A|908
6AWC|1|A|A|909
6AWC|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12