IL_6AWD_012

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6AWD|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3298

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6AWD|1|A|G|147
6AWD|1|A|G|148
6AWD|1|A|A|149
6AWD|1|A|U|150
6AWD|1|A|A|151
6AWD|1|A|A|152
6AWD|1|A|C|153
*
6AWD|1|A|G|168
6AWD|1|A|C|169
6AWD|1|A|U|170
6AWD|1|A|A|171
6AWD|1|A|A|172
6AWD|1|A|U|173
6AWD|1|A|A|174
6AWD|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain W

30S ribosomal protein S20