IL_6AWD_023

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

6AWD|1|A|U|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_023 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.5636

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6AWD|1|A|G|450
6AWD|1|A|A|451
6AWD|1|A|A|452
6AWD|1|A|G|453
6AWD|1|A|G|454
6AWD|1|A|G|455
*
6AWD|1|A|C|477
6AWD|1|A|A|478
6AWD|1|A|U|479
6AWD|1|A|U|480
6AWD|1|A|G|481
6AWD|1|A|A|482
6AWD|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16