3D structure

PDB id
6AWD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
Experimental method
ELECTRON MICROSCOPY
Resolution
8.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6AWD|1|A|U|531, 6AWD|1|A|A|532, 6AWD|1|A|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6AWD_025 not in the Motif Atlas
Homologous match to IL_6CZR_133
Geometric discrepancy: 0.5033
The information below is about IL_6CZR_133
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.3
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

6AWD|1|A|G|515
6AWD|1|A|U|516
6AWD|1|A|G|517
6AWD|1|A|C|518
6AWD|1|A|C|519
6AWD|1|A|A|520
6AWD|1|A|G|521
*
6AWD|1|A|C|528
6AWD|1|A|G|529
6AWD|1|A|G|530
6AWD|1|A|U|531
6AWD|1|A|A|532
6AWD|1|A|A|533
6AWD|1|A|U|534
6AWD|1|A|A|535
6AWD|1|A|C|536

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
30S ribosomal protein S3
Chain G
30S ribosomal protein S4
Chain O
30S ribosomal protein S12

Coloring options:


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