IL_6AWD_026

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6AWD|1|A|A|573

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_026 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.2976

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6AWD|1|A|C|569
6AWD|1|A|G|570
6AWD|1|A|U|571
6AWD|1|A|A|572
6AWD|1|A|A|573
6AWD|1|A|A|574
6AWD|1|A|G|575
*
6AWD|1|A|C|880
6AWD|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain T

30S ribosomal protein S17