IL_6AWD_036

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_036 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.2753

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6AWD|1|A|C|779
6AWD|1|A|A|780
6AWD|1|A|A|781
6AWD|1|A|A|782
6AWD|1|A|C|783
*
6AWD|1|A|G|799
6AWD|1|A|G|800
6AWD|1|A|U|801
6AWD|1|A|A|802
6AWD|1|A|G|803

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S11

Chain X

30S ribosomal protein S21