IL_6AWD_060

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6AWD|1|A|A|1492

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_060 not in the Motif Atlas

Geometric match to IL_4V88_476

Geometric discrepancy: 0.3544

The information below is about IL_4V88_476

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6AWD|1|A|C|1407
6AWD|1|A|A|1408
6AWD|1|A|C|1409
*
6AWD|1|A|G|1491
6AWD|1|A|A|1492
6AWD|1|A|A|1493
6AWD|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12