IL_6AWD_069

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_069 not in the Motif Atlas

Geometric match to IL_7MLW_006

Geometric discrepancy: 0.337

The information below is about IL_7MLW_006

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6AWD|1|A|C|511
6AWD|1|A|U|512
6AWD|1|A|C|513
*
6AWD|1|A|G|538
6AWD|1|A|A|539
6AWD|1|A|G|540

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain O

30S ribosomal protein S12