IL_6AWD_071

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_071 not in the Motif Atlas

Geometric match to IL_1G1X_001

Geometric discrepancy: 0.2288

The information below is about IL_1G1X_001

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6AWD|1|A|G|654
6AWD|1|A|A|655
*
6AWD|1|A|U|751
6AWD|1|A|G|752
6AWD|1|A|A|753
6AWD|1|A|C|754

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S8

Chain R

30S ribosomal protein S15