IL_6AWD_078

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AWD_078 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.2835

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6AWD|1|A|G|887
6AWD|1|A|G|888
6AWD|1|A|A|889
6AWD|1|A|G|890
6AWD|1|A|U|891
6AWD|1|A|A|892
6AWD|1|A|C|893
6AWD|1|A|G|894
*
6AWD|1|A|U|905
6AWD|1|A|A|906
6AWD|1|A|A|907
6AWD|1|A|A|908
6AWD|1|A|A|909
6AWD|1|A|C|910

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12