IL_6AZ1_002

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCA*UA

Length

5 nucleotides

Bulged bases

6AZ1|1|1|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_002 not in the Motif Atlas

Homologous match to IL_4V88_384

Geometric discrepancy: 0.4428

The information below is about IL_4V88_384

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

6AZ1|1|1|U|24
6AZ1|1|1|C|25
6AZ1|1|1|A|26
*
6AZ1|1|1|U|649
6AZ1|1|1|A|650

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain P

ribosomal protein S12