IL_6AZ1_004

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

U(OMC)AAG*CGAAAA

Length

11 nucleotides

Bulged bases

6AZ1|1|1|A|516

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_004 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.1899

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6AZ1|1|1|U|37
6AZ1|1|1|OMC|38
6AZ1|1|1|A|39
6AZ1|1|1|A|40
6AZ1|1|1|G|41
*
6AZ1|1|1|C|514
6AZ1|1|1|G|515
6AZ1|1|1|A|516
6AZ1|1|1|A|517
6AZ1|1|1|A|518
6AZ1|1|1|A|519

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain D

ribosomal protein S4

Chain E

ribosomal protein S4e