IL_6AZ1_005
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUUAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 6AZ1|1|1|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_005 not in the Motif Atlas
- Geometric match to IL_4V88_387
- Geometric discrepancy: 0.1219
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|G|42
6AZ1|1|1|A|43
6AZ1|1|1|C|44
6AZ1|1|1|U|45
6AZ1|1|1|U|46
6AZ1|1|1|A|47
6AZ1|1|1|G|48
*
6AZ1|1|1|C|474
6AZ1|1|1|G|475
6AZ1|1|1|C|476
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain D
- ribosomal protein S4
- Chain P
- ribosomal protein S12
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