IL_6AZ1_009

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACG*CAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_009 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.5698

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6AZ1|1|1|G|107
6AZ1|1|1|A|108
6AZ1|1|1|C|109
6AZ1|1|1|G|110
*
6AZ1|1|1|C|346
6AZ1|1|1|A|347
6AZ1|1|1|A|348
6AZ1|1|1|C|349

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain E

ribosomal protein S4e

Chain K

ribosomal protein S8e

Chain U

ribosomal protein S17