IL_6AZ1_013
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6AZ1|1|1|U|175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_013 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.0934
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6AZ1|1|1|G|148
6AZ1|1|1|G|149
6AZ1|1|1|A|150
6AZ1|1|1|U|151
6AZ1|1|1|A|152
6AZ1|1|1|A|153
6AZ1|1|1|C|154
*
6AZ1|1|1|G|170
6AZ1|1|1|C|171
6AZ1|1|1|U|172
6AZ1|1|1|A|173
6AZ1|1|1|A|174
6AZ1|1|1|U|175
6AZ1|1|1|A|176
6AZ1|1|1|C|177
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain G
- ribosomal protein S6e
- Chain Z
- ribosomal protein S24e
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