IL_6AZ1_031
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACUAAAGA*UAGAAAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_031 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.293
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|G|852
6AZ1|1|1|A|853
6AZ1|1|1|C|854
6AZ1|1|1|U|855
6AZ1|1|1|A|856
6AZ1|1|1|A|857
6AZ1|1|1|A|858
6AZ1|1|1|G|859
6AZ1|1|1|A|860
*
6AZ1|1|1|U|892
6AZ1|1|1|A|893
6AZ1|1|1|G|894
6AZ1|1|1|A|895
6AZ1|1|1|A|896
6AZ1|1|1|A|897
6AZ1|1|1|G|898
6AZ1|1|1|C|899
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain D
- ribosomal protein S4
- Chain E
- ribosomal protein S4e
- Chain J
- ribosomal protein S8
- Chain U
- ribosomal protein S17
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