IL_6AZ1_034

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*UCCUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_034 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.3883

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6AZ1|1|1|G|1111
6AZ1|1|1|A|1112
6AZ1|1|1|G|1113
*
6AZ1|1|1|U|1208
6AZ1|1|1|C|1209
6AZ1|1|1|C|1210
6AZ1|1|1|U|1211
6AZ1|1|1|C|1212

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain J

ribosomal protein S8

Chain T

ribosomal protein S15

Chain c

ribosomal protein S27e