IL_6AZ1_040
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUCAG*CUUAGACC
- Length
- 13 nucleotides
- Bulged bases
- 6AZ1|1|1|A|1160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_040 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1218
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6AZ1|1|1|G|1142
6AZ1|1|1|U|1143
6AZ1|1|1|C|1144
6AZ1|1|1|A|1145
6AZ1|1|1|G|1146
*
6AZ1|1|1|C|1157
6AZ1|1|1|U|1158
6AZ1|1|1|U|1159
6AZ1|1|1|A|1160
6AZ1|1|1|G|1161
6AZ1|1|1|A|1162
6AZ1|1|1|C|1163
6AZ1|1|1|C|1164
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain A
- Ribosomal protein s1e
- Chain O
- ribosomal protein S11
Coloring options: