IL_6AZ1_043
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAC*GUUACAG
- Length
- 10 nucleotides
- Bulged bases
- 6AZ1|1|1|U|1448, 6AZ1|1|1|A|1450, 6AZ1|1|1|A|1452
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_043 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1402
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|C|1281
6AZ1|1|1|A|1282
6AZ1|1|1|C|1283
*
6AZ1|1|1|G|1447
6AZ1|1|1|U|1448
6AZ1|1|1|U|1449
6AZ1|1|1|A|1450
6AZ1|1|1|C|1451
6AZ1|1|1|A|1452
6AZ1|1|1|G|1453
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain F
- ribosomal protein S5
- Chain J
- ribosomal protein S8
- Chain P
- ribosomal protein S12
- Chain T
- ribosomal protein S15
- Chain U
- ribosomal protein S17
- Chain c
- ribosomal protein S27e
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