IL_6AZ1_045
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUCCUUAUAU*ACGU
- Length
- 14 nucleotides
- Bulged bases
- 6AZ1|1|1|C|1358, 6AZ1|1|1|C|1359, 6AZ1|1|1|U|1360
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_045 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.3996
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|A|1297
6AZ1|1|1|U|1298
6AZ1|1|1|C|1358
6AZ1|1|1|C|1359
6AZ1|1|1|U|1360
6AZ1|1|1|U|1361
6AZ1|1|1|A|1362
6AZ1|1|1|U|1365
6AZ1|1|1|A|1366
6AZ1|1|1|U|1367
*
6AZ1|1|1|A|1414
6AZ1|1|1|C|1415
6AZ1|1|1|G|1416
6AZ1|1|1|U|1417
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain A
- Ribosomal protein s1e
- Chain B
- ribosomal protein S2
- Chain I
- ribosomal protein S7e
- Chain J
- ribosomal protein S8
- Chain V
- ribosomal protein S17e
- Chain Y
- ribosomal protein S21e
- Chain c
- ribosomal protein S27e
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