IL_6AZ1_046
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(OMG)AGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_046 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1092
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|G|1463
6AZ1|1|1|OMG|1464
6AZ1|1|1|A|1465
6AZ1|1|1|G|1466
6AZ1|1|1|U|1467
6AZ1|1|1|A|1468
6AZ1|1|1|C|1469
6AZ1|1|1|G|1470
*
6AZ1|1|1|U|1481
6AZ1|1|1|G|1482
6AZ1|1|1|A|1483
6AZ1|1|1|A|1484
6AZ1|1|1|A|1485
6AZ1|1|1|C|1486
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain P
- ribosomal protein S12
Coloring options: