IL_6AZ1_050
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCGUG*C(OMG)(OMC)AC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_050 not in the Motif Atlas
- Geometric match to IL_5TBW_121
- Geometric discrepancy: 0.3221
- The information below is about IL_5TBW_121
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6AZ1|1|1|G|1524
6AZ1|1|1|C|1525
6AZ1|1|1|G|1526
6AZ1|1|1|U|1527
6AZ1|1|1|G|1528
*
6AZ1|1|1|C|1864
6AZ1|1|1|OMG|1865
6AZ1|1|1|OMC|1866
6AZ1|1|1|A|1867
6AZ1|1|1|C|1868
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain L
- ribosomal protein S9
- Chain R
- ribosomal protein S13
- Chain X
- ribosomal protein S19e
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