IL_6AZ1_055

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_055 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.2355

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6AZ1|1|1|A|1586
6AZ1|1|1|C|1587
6AZ1|1|1|A|1588
*
6AZ1|1|1|U|1601
6AZ1|1|1|U|1602
6AZ1|1|1|U|1603

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain S

ribosomal protein S14

Chain f

ribosomal protein S31e