IL_6AZ1_056
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(OMG)UGCAU*AUGCU
- Length
- 12 nucleotides
- Bulged bases
- 6AZ1|1|1|C|1626
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_056 not in the Motif Atlas
- Geometric match to IL_4V88_422
- Geometric discrepancy: 0.3619
- The information below is about IL_4V88_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05145.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
6AZ1|1|1|G|1622
6AZ1|1|1|OMG|1623
6AZ1|1|1|U|1624
6AZ1|1|1|G|1625
6AZ1|1|1|C|1626
6AZ1|1|1|A|1627
6AZ1|1|1|U|1628
*
6AZ1|1|1|A|1837
6AZ1|1|1|U|1838
6AZ1|1|1|G|1839
6AZ1|1|1|C|1840
6AZ1|1|1|U|1841
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 5
- mRNA
- Chain C
- ribosomal protein S3
- Chain M
- ribosomal protein S10
- Chain N
- ribosomal protein S10e
- Chain S
- ribosomal protein S14
- Chain e
- ribosomal protein S30e
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