IL_6AZ1_059

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_059 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1436

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6AZ1|1|1|C|1642
6AZ1|1|1|G|1643
6AZ1|1|1|G|1644
*
6AZ1|1|1|C|1675
6AZ1|1|1|G|1676
6AZ1|1|1|G|1677

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain B

ribosomal protein S2

Chain C

ribosomal protein S3

Chain F

ribosomal protein S5

Chain V

ribosomal protein S17e