IL_6AZ1_062
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGUA*U(OMU)CU
- Length
- 8 nucleotides
- Bulged bases
- 6AZ1|1|1|G|1697, 6AZ1|1|1|U|1698
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_062 not in the Motif Atlas
- Geometric match to IL_4V88_456
- Geometric discrepancy: 0.2069
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|A|1696
6AZ1|1|1|G|1697
6AZ1|1|1|U|1698
6AZ1|1|1|A|1699
*
6AZ1|1|1|U|1776
6AZ1|1|1|OMU|1777
6AZ1|1|1|C|1778
6AZ1|1|1|U|1779
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain C
- ribosomal protein S3
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain g
- LACK1
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