IL_6AZ1_066
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AG*CAU
- Length
- 5 nucleotides
- Bulged bases
- 6AZ1|1|1|A|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_066 not in the Motif Atlas
- Geometric match to IL_1I9X_001
- Geometric discrepancy: 0.2111
- The information below is about IL_1I9X_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
6AZ1|1|1|A|1878
6AZ1|1|1|G|1879
*
6AZ1|1|1|C|1946
6AZ1|1|1|A|1947
6AZ1|1|1|U|1948
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain H
- ribosomal protein S7
- Chain L
- ribosomal protein S9
- Chain R
- ribosomal protein S13
- Chain X
- ribosomal protein S19e
- Chain a
- ribosomal protein S25e
Coloring options: