IL_6AZ1_069

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6AZ1|1|1|C|2057, 6AZ1|1|1|A|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_069 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.1216

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6AZ1|1|1|C|2056
6AZ1|1|1|C|2057
6AZ1|1|1|G|2058
*
6AZ1|1|1|C|2167
6AZ1|1|1|A|2168
6AZ1|1|1|A|2169
6AZ1|1|1|G|2170

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 5

mRNA

Chain b

ribosomal protein S26e