IL_6AZ1_072

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGU*AAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_072 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.1916

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6AZ1|1|1|C|2064
6AZ1|1|1|G|2065
6AZ1|1|1|U|2066
*
6AZ1|1|1|A|2157
6AZ1|1|1|A|2158
6AZ1|1|1|A|2159
6AZ1|1|1|G|2160

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 5

mRNA

Chain P

ribosomal protein S12

Chain e

ribosomal protein S30e