IL_6AZ1_074

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_074 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.0967

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6AZ1|1|1|C|2073
6AZ1|1|1|G|2074
6AZ1|1|1|A|2075
6AZ1|1|1|U|2076
*
6AZ1|1|1|A|2147
6AZ1|1|1|G|2148
6AZ1|1|1|A|2149
6AZ1|1|1|G|2150

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains