IL_6AZ1_076

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGCA*UU(OMC)UU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_076 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2728

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6AZ1|1|1|G|2081
6AZ1|1|1|U|2082
6AZ1|1|1|G|2083
6AZ1|1|1|C|2084
6AZ1|1|1|A|2085
*
6AZ1|1|1|U|2138
6AZ1|1|1|U|2139
6AZ1|1|1|OMC|2140
6AZ1|1|1|U|2141
6AZ1|1|1|U|2142

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain K

ribosomal protein S8e