IL_6AZ1_077

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_077 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1511

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6AZ1|1|1|A|2088
6AZ1|1|1|C|2089
6AZ1|1|1|A|2090
6AZ1|1|1|G|2091
*
6AZ1|1|1|C|2132
6AZ1|1|1|G|2133
6AZ1|1|1|A|2134
6AZ1|1|1|U|2135

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain G

ribosomal protein S6e

Chain K

ribosomal protein S8e