IL_6AZ1_079
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGGAC*GAAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_079 not in the Motif Atlas
- Geometric match to IL_7RQB_075
- Geometric discrepancy: 0.1719
- The information below is about IL_7RQB_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_56467.8
- Basepair signature
- cWW-tSH-tSH-tHS-cWW
- Number of instances in this motif group
- 29
Unit IDs
6AZ1|1|1|C|2097
6AZ1|1|1|G|2098
6AZ1|1|1|G|2099
6AZ1|1|1|A|2100
6AZ1|1|1|C|2101
*
6AZ1|1|1|G|2122
6AZ1|1|1|A|2123
6AZ1|1|1|A|2124
6AZ1|1|1|A|2125
6AZ1|1|1|G|2126
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain G
- ribosomal protein S6e
- Chain K
- ribosomal protein S8e
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