IL_6AZ1_084
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUACU*AAGAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_084 not in the Motif Atlas
- Geometric match to IL_4LFB_065
- Geometric discrepancy: 0.2032
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6AZ1|1|1|G|1132
6AZ1|1|1|U|1133
6AZ1|1|1|A|1134
6AZ1|1|1|C|1135
6AZ1|1|1|U|1136
*
6AZ1|1|1|A|1170
6AZ1|1|1|A|1171
6AZ1|1|1|G|1172
6AZ1|1|1|A|1173
6AZ1|1|1|C|1174
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain A
- Ribosomal protein s1e
- Chain O
- ribosomal protein S11
- Chain b
- ribosomal protein S26e
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