IL_6AZ1_086

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*(OMC)AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_086 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.3662

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6AZ1|1|1|G|1524
6AZ1|1|1|C|1525
6AZ1|1|1|G|1526
*
6AZ1|1|1|OMC|1866
6AZ1|1|1|A|1867
6AZ1|1|1|C|1868

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain L

ribosomal protein S9

Chain R

ribosomal protein S13

Chain X

ribosomal protein S19e