IL_6AZ1_088

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(OMU)G*UC

Length

5 nucleotides

Bulged bases

6AZ1|1|1|OMU|1621

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6AZ1_088 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.1915

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

6AZ1|1|1|G|1620
6AZ1|1|1|OMU|1621
6AZ1|1|1|G|1622
*
6AZ1|1|1|U|1841
6AZ1|1|1|C|1842

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain N

ribosomal protein S10e

Chain S

ribosomal protein S14

Chain e

ribosomal protein S30e