IL_6AZ1_093
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(4OC)C(5MC)*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6AZ1_093 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0843
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6AZ1|1|1|G|2058
6AZ1|1|1|4OC|2059
6AZ1|1|1|C|2060
6AZ1|1|1|5MC|2061
*
6AZ1|1|1|G|2163
6AZ1|1|1|U|2164
6AZ1|1|1|A|2165
6AZ1|1|1|A|2166
6AZ1|1|1|C|2167
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 5
- mRNA
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