IL_6B4V_038

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUG*CCC

Length

7 nucleotides

Bulged bases

6B4V|1|A|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_038 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.242

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6B4V|1|A|G|1047
6B4V|1|A|G|1048
6B4V|1|A|U|1049
6B4V|1|A|G|1050
*
6B4V|1|A|C|1208
6B4V|1|A|C|1209
6B4V|1|A|C|1210

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain JA

Peptide chain release factor 1

Chain WA

30S ribosomal protein S14 type Z